Really it's a very select few. I played on console when I was younger for the most part, and I think the only games that got close are probably Halo 3 and the OG CoD Modern Warfare as I played a ton of multiplayer with my friends (some of the other CoD and Halo games may also be close to that figure but I really can't recall and have no way of looking). My Steam account goes back to 2013, I believe, and zero games have over 1k on my account. I know for a fact Runescape and World of Warcraft both top 1,000 hours, but I've generally launched those games from separate clients. Borderlands 2 is probably on the only other game that comes close, but split hours between console and PC makes that hard to determine.
In general, it's exceedingly rare for me to put even 100 hours into a single game, let alone 1,000. Since I do enjoy MMOs it becomes a bit more possible, though. Once I get back into FFXIV (taking a break during summer since I don't have AC) I think it's possible that I'll eventually put in a ton of hours. I love the game and I've played MMOs since 2006, so I could see myself sticking with it for a long time.